RnoEX0022773 @ rn6
Exon Skipping
Gene
ENSRNOG00000023148 | Col11a1
Description
collagen type XI alpha 1 chain [Source:RGD Symbol;Acc:2372]
Coordinates
chr2:216923973-216931425:+
Coord C1 exon
chr2:216923973-216924098
Coord A exon
chr2:216930648-216930764
Coord C2 exon
chr2:216931333-216931425
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTTGTTCCTCTGCAACGAAGTAT
3' ss Score
0.29
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
GGTGATATTCAGCAGTTCCTGATCACTGGTGACCCCAAGGCAGCATATGACTACTGTGACCATTACAGTCCCGACTGTGACTTAACATCCAAGGCCGCTCAGGCCCAGGAGCCGCACATAGATGAG
Seq A exon
TATGCACCTGAGGATATAATCGAGTATGACTATGAATATGGGGAGACAGACTATAAAGAGGCTGAGAGTGTAACAGAGATGCCCACTGTCACTGAAGAAACAGTAGCACAAACTGAG
Seq C2 exon
GCAAATATTGTGGATGACTTTCAAGACTATAACTATGGAACGATGGAAACTTACCAGACTGAGTCTCCTCGGCGGGTATCAGGATCAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023148_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.769 C2=0.935
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PD(8.1=23.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGATATTCAGCAGTTCCTGA
R:
TCATTTGATCCTGATACCCGCC
Band lengths:
218-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]