MmuEX0012191 @ mm9
Exon Skipping
Gene
ENSMUSG00000001506 | Col1a1
Description
collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
Coordinates
chr11:94803330-94805145:+
Coord C1 exon
chr11:94803330-94803428
Coord A exon
chr11:94803518-94803562
Coord C2 exon
chr11:94805047-94805145
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTCCTTTCTCTATGTGACAGGGA
3' ss Score
7.74
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GGTGAAGCTGGTCCCCAAGGAGCTAGAGGCTCTGAAGGTCCCCAGGGTGTGCGTGGTGAGCCCGGACCCCCTGGCCCTGCTGGTGCTGCCGGCCCTGCT
Seq A exon
GGAAACCCTGGTGCTGATGGACAACCTGGCGCTAAAGGTGCCAAT
Seq C2 exon
GGTCCCGCTGGTCAAGATGGTCGCCCTGGACCCGCAGGTCCTCCTGGAGCCCGTGGCCAGGCTGGTGTGATGGGATTCCCTGGACCTAAGGGTACCGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001506_MULTIEX1-2/19=1-9
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(3.3=6.1),PF0139113=Collagen=FE(36.8=100)
A:
PF0139113=Collagen=FE(16.1=100)
C2:
PF0139113=Collagen=PU(28.0=78.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGAAGGTCCCCAGGGTG
R:
GAATCCCATCACACCAGCCTG
Band lengths:
148-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: