MmuEX0012228 @ mm10
Exon Skipping
Gene
ENSMUSG00000063564 | Col23a1
Description
collagen, type XXIII, alpha 1 [Source:MGI Symbol;Acc:MGI:2653243]
Coordinates
chr11:51289920-51517250:+
Coord C1 exon
chr11:51289920-51290387
Coord A exon
chr11:51316896-51316962
Coord C2 exon
chr11:51517206-51517250
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTCTTCTCGGTTCAGAAG
3' ss Score
7.71
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTCCGGCCGCTCCTCCCCTGGGTGGGTCCCCGCGCCTTTTCTGGCGGGGTCTATTTGCATAGAAGGAACTGCCCGCAGTGGCCGCTGAGTCTGAGCGGGCGGCTAGGGGGGCGTGCGCGATCCGCGGCCACCCGGACGCGGAGCCCCGCAGCCGCCGACCTGGAGCCGCCCCGGGCCGCAGCGCCGACGCAGAGCCGGCGGGTCGCCATGGGCGCGGGCGAGCGCGCGGCGGGCGGAGGAGGCGCGCAGGACCCCGGAGCGGGCTGCGGGTCGCGGGCGCTGAGCGCGCTGTGCCTGCTGCTGTCGGTGGGCTCTGCGGCCGCCTGTCTCCTGTTGGGAGCCCAGGCGGCCGCCCTGCATGGCCGAGTGGCGGCGCTGGAGCAGGAGCGCGAGCTGTTGCGGCATGCGGGGCCGTCCGGAGCCCTGGCCGCCTGGGCCGAAACGCACCTGGAGCGCCTGTTACGGGAG
Seq A exon
AAGTTGGATGGAGTCGCCAAGCTCAGGACAGTTCGAGAAGCCCCATCTGAGTGCATCTGTCCCCCTG
Seq C2 exon
GTCCCCCTGGACGGCGTGGCAAGCCTGGACGAAGAGGCGACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063564-'0-4,'0-1,1-4
Average complexity
S
Mappability confidence:
86%=100=83%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=0.717 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(5.4=13.0)
C2:
PF0139113=Collagen=FE(26.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTGTCTCCTGTTGGGA
R:
CTTCGTCCAGGCTTGCCAC
Band lengths:
182-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types