MmuEX0012228 @ mm9
Exon Skipping
Gene
ENSMUSG00000063564 | Col23a1
Description
collagen, type XXIII, alpha 1 [Source:MGI Symbol;Acc:MGI:2653243]
Coordinates
chr11:51103422-51330752:+
Coord C1 exon
chr11:51103422-51103889
Coord A exon
chr11:51130398-51130464
Coord C2 exon
chr11:51330708-51330752
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTCTTCTCGGTTCAGAAG
3' ss Score
7.71
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTCCGGCCGCTCCTCCCCTGGGTGGGTCCCCGCGCCTTTTCTGGCGGGGTCTATTTGCATAGAAGGAACTGCCCGCAGTGGCCGCTGAGTCTGAGCGGGCGGCTAGGGGGGCGTGCGCGATCCGCGGCCACCCGGACGCGGAGCCCCGCAGCCGCCGACCTGGAGCCGCCCCGGGCCGCAGCGCCGACGCAGAGCCGGCGGGTCGCCATGGGCGCGGGCGAGCGCGCGGCGGGCGGAGGAGGCGCGCAGGACCCCGGAGCGGGCTGCGGGTCGCGGGCGCTGAGCGCGCTGTGCCTGCTGCTGTCGGTGGGCTCTGCGGCCGCCTGTCTCCTGTTGGGAGCCCAGGCGGCCGCCCTGCATGGCCGAGTGGCGGCGCTGGAGCAGGAGCGCGAGCTGTTGCGGCATGCGGGGCCGTCCGGAGCCCTGGCCGCCTGGGCCGAAACGCACCTGGAGCGCCTGTTACGGGAG
Seq A exon
AAGTTGGATGGAGTCGCCAAGCTCAGGACAGTTCGAGAAGCCCCATCTGAGTGCATCTGTCCCCCTG
Seq C2 exon
GTCCCCCTGGACGGCGTGGCAAGCCTGGACGAAGAGGCGACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063564-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
80%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.414 A=0.870 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(5.4=13.0)
C2:
PF0139113=Collagen=FE(26.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTGTCTCCTGTTGGGA
R:
CTTCGTCCAGGCTTGCCAC
Band lengths:
182-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: