RnoEX0048465 @ rn6
Exon Skipping
Gene
ENSRNOG00000003349 | LOC103693323
Description
collagen alpha-1(XXIII) chain [Source:RGD Symbol;Acc:9310824]
Coordinates
chr10:36740777-36966128:+
Coord C1 exon
chr10:36740777-36740877
Coord A exon
chr10:36770848-36770914
Coord C2 exon
chr10:36966084-36966128
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTCTTCTCGGTTCAGAAG
3' ss Score
7.71
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CATACCATTTGTTTTCATCTGCTTCCTGAACCAAACGCTCCCTCTGGTTCAGAAACGAAGTATGAGCATTTCTGTCTGGTGACCATGCCTGACTGTAAATG
Seq A exon
AAGTTGGATGGAGTCGCCAAGCTCAGGACAGTTCGAGAAGCCCCCTCTGAGTGCATCTGTCCCCCTG
Seq C2 exon
GTCCCCCTGGACGGCGTGGCAAGCCGGGACGAAGAGGCGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003349-'1-3,'1-0,6-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.826 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
PF0139113=Collagen=PU(5.7=13.0)
C2:
PF0139113=Collagen=FE(28.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATTTGTTTTCATCTGCTTCCTG
R:
CTGGGTCGCCTCTTCGTCC
Band lengths:
143-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]