MmuEX0012344 @ mm10
Exon Skipping
Gene
ENSMUSG00000025650 | Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108982674-108983605:+
Coord C1 exon
chr9:108982674-108982722
Coord A exon
chr9:108983334-108983366
Coord C2 exon
chr9:108983519-108983605
Length
33 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTCTGTCACTTCCAGCCT
3' ss Score
9.76
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
GAGGATGACATTCGGGACTTTGTGCGTCAGGAGATGAGTCAGCACTGTG
Seq A exon
CCTGCCAGGGCCAGTTTATTGCGTCTGGATCAC
Seq C2 exon
GACCCCTCCCCGGTTATGCTGCGGATACAGCTGGTTCCCAGCTTCACCATGTTCCTGTGCTCCGGGTCTCTCATGTTGAGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025650-'133-146,'133-145,134-146
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.706 A=0.583 C2=0.967
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(0.1=0.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCGGGACTTTGTGCGTCAG
R:
TCAACATGAGAGACCCGGAGC
Band lengths:
119-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types