BtaEX6095624 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019081 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr22:51887777-51888739:+
Coord C1 exon
chr22:51887777-51887825
Coord A exon
chr22:51888472-51888504
Coord C2 exon
chr22:51888653-51888739
Length
33 bp
Sequences
Splice sites
3' ss Seq
CCCTTCTCTGCCCTCTCCAGCCT
3' ss Score
8.6
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
GAGGATGACATTCGGGGCCTTGTGCGTCAGGAGATGAGTCAACATTGCG
Seq A exon
CCTGTCAGGGCCAGTATATCGCATCTGGATCAC
Seq C2 exon
GGCCTCTCCCGAGTTACGCAGCAGACACCGCTGGCCCGCAGCTCCACCCCGTGCCCGTGCTCCGCGTGTCCCACGCAGAGGAGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019081-'116-122,'116-121,117-122=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.706 A=0.583 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(0.1=0.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCGTCAGGAGATGAGTCA
R:
CCTCCTCTGCGTGGGACA
Band lengths:
113-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]