MmuEX0013327 @ mm9
Exon Skipping
Gene
ENSMUSG00000040650 | Cyp2b23
Description
cytochrome P450, family 2, subfamily b, polypeptide 23 [Source:MGI Symbol;Acc:MGI:3646735]
Coordinates
chr7:27460015-27466483:-
Coord C1 exon
chr7:27466334-27466483
Coord A exon
chr7:27464412-27464572
Coord C2 exon
chr7:27460015-27460191
Length
161 bp
Sequences
Splice sites
3' ss Seq
CCTACCTCCTCACCTTCCAGGAG
3' ss Score
10.79
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTGTGATCTTTTCCAGTGGGGAACGTTGGAAGACCCTTCGGCGATTCTCTCTGGCCACCATGAGAGACTTTGGGATGGGAAAGCGGAGTGTGGAGGAGCGGATAAAGGAAGAGGCCCAATGTTTGGTGGAGGAACTAAAGAAATACGAGG
Seq A exon
GAGCCCCCCTGGATCCCACCTTTCTCTTCCAGTGCATCACAGCCAATATCATCTGCTCCATTGTGTTTGGAGAGCGCTTTGACTACACAGATCACCAGTTCCTGCACCTGCTTGATCTGTTCTATCAGACCTTGTCACTTATCAGCTCATTCTCCAGTCAG
Seq C2 exon
TTGTTTGAACTCTTCTCTGCAGTCCTGAAGTACTTTCCTGGCACTCACAGACAAATTTCCAAAAACATACAGGAAATCCTCAACTACATTGGCCATAGTGTGGAGCAGCACAAGGCCACCTTGGACCCCAGTGCTCCACGAGACTTCATTGATACCTACCTTTTGCGCATGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040650-'4-6,'4-4,6-6
Average complexity
S
Mappability confidence:
89%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
PF0006717=p450=FE(11.6=100)
C2:
PF0006717=p450=FE(12.7=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGGGATGGGAAAGCGGAG
R:
CTCCATGCGCAAAAGGTAGGT
Band lengths:
257-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: