Special

MmuEX0013328 @ mm9

Exon Skipping

Gene
ENSMUSG00000003053 | Cyp2c29
Description
cytochrome P450, family 2, subfamily c, polypeptide 29 [Source:MGI Symbol;Acc:MGI:103238]
Coordinates
chr19:39365219-39382258:+
Coord C1 exon
chr19:39365219-39365381
Coord A exon
chr19:39365547-39365696
Coord C2 exon
chr19:39382098-39382258
Length
150 bp
Sequences
Splice sites
3' ss Seq
GTACCTTCTCATTTCTTTAGGCG
3' ss Score
9.11
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TTCTCAAAAGCTTATGGCCCTGTGTTCACTCTGTATTTGGGCTCAAAGCCTACTGTCATATTGCATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCGTGGGGAGGAGTTTGCTGGTAGAGGAAGCTTTCCAATGGCTGAAAAAATTATTAAAGGTTTTG
Seq A exon
GCGTTGTTTTTAGCAATGGAAACAGATGGAAAGAGATGAGACGATTTACACTCATGACCCTGCGAAATTTGGGCATGGGGAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTGAGGAAAACCAAAG
Seq C2 exon
GCTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003053-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0006717=p450=FE(11.8=100)

							
A:
PF0006717=p450=FE(10.9=100)

							
C2:
PF0006717=p450=FE(11.6=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000003137





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000127503, ENSMUSP00000135839, ENSMUSP00000135863
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr10:96701949-96702098 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr26:16234562-16234711 
BtaEX6099860
([1])
Chicken
(galGal4)
chr6:16739394-16739543 
HIGH PSI
GgaEX7006340
([2])
Chicken
(galGal3)
chr3:111598057-111598205 
Zebrafish
(danRer10)
chr3:8392430-8392579 
HIGH PSI
DreEX6015237
(cyp2k31)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TGCATGGGTATGAAGCAGTGA

				
R: 
ACCATGGGGAGCTCAGAATCT

				
Band lengths: 
258-408

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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