MmuEX0013339 @ mm10
Exon Skipping
Gene
ENSMUSG00000096852 | Cyp2d12
Description
cytochrome P450, family 2, subfamily d, polypeptide 12 [Source:MGI Symbol;Acc:MGI:88604]
Coordinates
chr15:82556201-82557036:+
Coord C1 exon
chr15:82556201-82556372
Coord A exon
chr15:82556644-82556796
Coord C2 exon
chr15:82556876-82557036
Length
153 bp
Sequences
Splice sites
3' ss Seq
ACACACAGATGTGTCTGCAGGTA
3' ss Score
4.62
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
Exon sequences
Seq C1 exon
CTTCAAAACCGCTATGGTGACGTGTTTAGCCTACAGATGGCCTGGAAGCCTATGGTTGTGATCAACAGAATGAAGGCAATGAAGGAAGTGCTGTTGACCTGTGGAGAGGACACTGCTGACCGCCCTCCAGTGCCCATCTTTGAGCATCTTGGTTTCAAGCCCAGATCCCAAG
Seq A exon
GTATGATCTTTGCACCCTATGGACCTGAGTGGCGAGAGCAGAGGCGATTCTCTTTGTCTTCTCTGCGCAATTTTGGCCTGGGCAGGAAATCTCTGGAGGAGTGGGTGATCAAGGAGGCCGGCCACCTCTGTGATGCCTTCACTACTCAGGCTG
Seq C2 exon
GGCAGTACATCAATCCCAACACCATGCTGAAAAAAGCTACGTGCAATGTGATTGCATCTCTCATTTTTGCCCGTCGCTTTGAATATGAAGACCCTTACCTCATCAGGATGCTGAAAGTACTGGAAGATAGTTTGACAGAACTCTCTGGATTAATTCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000096852_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.4=100)
A:
PF0006717=p450=FE(11.1=100)
C2:
PF0006717=p450=FE(11.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGAAGCCTATGGTTGTG
R:
AGCATCCTGATGAGGTAAGGGT
Band lengths:
245-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types