MmuEX0015017 @ mm9
Exon Skipping
Gene
ENSMUSG00000041144 | Dnahc7c
Description
dynein, axonemal, heavy chain 7B [Source:MGI Symbol;Acc:MGI:2684953]
Coordinates
chr1:46264290-46270365:+
Coord C1 exon
chr1:46264290-46264538
Coord A exon
chr1:46268094-46268243
Coord C2 exon
chr1:46270183-46270365
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTTTTTCATTAAGGGA
3' ss Score
8.17
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
GGAATTACCTCAGATTTGTTTCCTGGGGTGAAATTACCAAAGCCAGATTACAATGAACTGCTGGCCGCCATCAGAGAAAACTGCCACACCATGAATTTGCAAATGACCGACTTCTTCTCTGAGAAGATCCTTCAGATCTACGAGATGATGATTGTGCGTCATGGTTTCATGATTGTTGGAGAACCATTTGGAGGGAAGACCAGTGCATATCGTGTTCTAGCTGGAGCATTAAATGACATTTGTGAAAAG
Seq A exon
GGACTAATGGAAGAAAACAAGGTTCAAATAACTGTTTTAAATCCCAAGTCTGTCACCATGGGCCAGCTTTATGGGCAGTTTGACTTGGTTTCCCACGAGTGGTCTGATGGGATCCTGGCTGTCAGCTTTAGAGCGTTCGCAGCTTCCTCG
Seq C2 exon
ACTCCAGACAGGAAGTGGTTAATCTTTGATGGGCCAGTTGATGCCGTGTGGATTGAGAACATGAACACTGTGCTGGATGACAACAAGAAGCTGTGTCTGATGAGTGGGGAGATTATTCAAATGTCACCACAAATGAACCTGATTTTTGAACCGATGGATCTGGAAGTCGCCTCTCCTGCCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041144-'32-31,'32-30,33-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(19.4=33.7)
A:
PF077289=AAA_5=FE(34.0=100)
C2:
PF077289=AAA_5=PD(44.4=53.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCATCAGAGAAAACTGCCA
R:
TGTTCTCAATCCACACGGCAT
Band lengths:
245-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: