MmuEX0015308 @ mm9
Exon Skipping
Gene
ENSMUSG00000040265 | Dnm3
Description
dynamin 3 [Source:MGI Symbol;Acc:MGI:1341299]
Coordinates
chr1:163949959-164014275:-
Coord C1 exon
chr1:164014164-164014275
Coord A exon
chr1:163975517-163975528
Coord C2 exon
chr1:163949959-163950123
Length
12 bp
Sequences
Splice sites
3' ss Seq
ATACCAGCAATGACCAAAAGGGA
3' ss Score
-3.19
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
GAATGTATACAAAGACTATCGCTTCCTGGAGCTGGCCTGTGATTCCCAGGAAGATGTGGACAGCTGGAAGGCGTCTCTGCTCAGAGCCGGGGTCTACCCAGATAAATCTGTA
Seq A exon
GGAAAGAGAAAG
Seq C2 exon
ACTGAAAATGATGAAAATGGACAAGCAGAAAACTTTTCCATGGACCCACAGTTGGAGAGGCAAGTGGAGACCATACGCAACCTAGTAGACTCCTACATGTCAATAATCAACAAATGCATCCGAGACTTAATTCCAAAAACAATAATGCATCTTATGATCAATAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040265-MICROEX1-2/2
Average complexity
MIC_M
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=1.000 C2=0.309
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(27.9=76.3)
A:
NO
C2:
PF0221213=GED=PU(41.3=69.1)
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGCGTCTCTGCTCAGA
R:
TCCAACTGTGGGTCCATGGAA
Band lengths:
103-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: