RnoEX0029083 @ rn6
Exon Skipping
Gene
ENSRNOG00000026490 | Dnm3
Description
dynamin 3 [Source:RGD Symbol;Acc:727949]
Coordinates
chr13:79936418-80000033:-
Coord C1 exon
chr13:79999922-80000033
Coord A exon
chr13:79989762-79989773
Coord C2 exon
chr13:79936418-79936582
Length
12 bp
Sequences
Splice sites
3' ss Seq
CCTTGTGGCTGCACGCACAGGGG
3' ss Score
3.01
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GAATGTCTACAAAGACTATCGTTCCCTGGAGCTGGCCTGTGATTCCCAGGAGGATGTGGACAGCTGGAAGGCGTCTCTGCTCAGAGCTGGCGTCTATCCAGACAAGTCTTTT
Seq A exon
GGGAGCAACAAA
Seq C2 exon
ACTGAAAATGATGAAAATGGACAAGCAGAAAACTTCTCCATGGACCCGCAGTTGGAGAGGCAAGTGGAGACTATTCGCAACCTCGTAGACTCCTACATGTCGATAATCAACAAATGCATCCGAGACCTAATTCCAAAAACAATAATGCACCTTATGATCAATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026490-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=1.000 C2=0.285
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(27.9=76.3)
A:
NO
C2:
PF0221213=GED=PU(41.3=69.1)
Main Inclusion Isoform:
ENSRNOT00000067653fB4346
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGAGCTGGCGTCTATCCA
R:
TCTCCACTTGCCTCTCCAACT
Band lengths:
103-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]