BtaEX0011748 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014319 | DNM3
Description
dynamin 3 [Source:HGNC Symbol;Acc:HGNC:29125]
Coordinates
chr16:40654036-40735508:+
Coord C1 exon
chr16:40654036-40654136
Coord A exon
chr16:40661933-40661944
Coord C2 exon
chr16:40735408-40735508
Length
12 bp
Sequences
Splice sites
3' ss Seq
CCTTGCGGCTACATGCACAGGGG
3' ss Score
4.32
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AAGACTACCGCTTCCTTGAGCTGGCATGTGATTCGCAGGAGGATGTAGACAGCTGGAAGGCATCTCTACTGAGAGCTGGAGTTTATCCTGATAAATCTTTA
Seq A exon
GGGAACAACAAA
Seq C2 exon
ACTGAAAATGATGAGAATGGCCAAGCAGAAAACTTTTCTATGGACCCACAGTTGGAGAGACAAGTGGAGACCATTCGCAACCTTGTAGACTCCTATATGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014319-'25-22,'25-21,26-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGTGATTCGCAGGAGGAT
R:
TCTGCTTGGCCATTCTCATCA
Band lengths:
107-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development