GgaEX0029072 @ galGal3
Exon Skipping
Gene
ENSGALG00000003164 | F1NQQ1_CHICK
Description
NA
Coordinates
chr8:4626969-4660483:-
Coord C1 exon
chr8:4660372-4660483
Coord A exon
chr8:4656200-4656211
Coord C2 exon
chr8:4626969-4627133
Length
12 bp
Sequences
Splice sites
3' ss Seq
CCCTGCCGCATCCTGCAAAGGGG
3' ss Score
4.02
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GAATGTTTACAAGGATTACCGTTTCCTTGAACTAGCCTGTGACTCCCAAGAGGAGGTGGATAGCTGGAAGGCATCTCTGCTACGAGCCGGTGTCTATCCTGATAAATCCTCA
Seq A exon
GGGAACAACAGA
Seq C2 exon
ACGGAAAATGATGAGAATGGCCAAGCGGACAATTTTTCAATGGACCCCCAATTGGAGAGACAGGTGGAGACGATTCGAAATCTGGTGGACTCCTACATGTCTATTATCAACAAATGTATCCGAGACTTGATACCGAAAACAATCATGCACCTTATGATCAATAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003164-MICROEX3
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.079 A=1.000 C2=0.309
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(27.9=76.3)
A:
NA
C2:
PF0221213=GED=PU(41.3=69.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGATAGCTGGAAGGCAT
R:
AATTGTCCGCTTGGCCATTCT
Band lengths:
93-105
Functional annotations
There are 0 annotated functions for this event