MmuEX0015308 @ mm10
Exon Skipping
Gene
ENSMUSG00000040265 | Dnm3
Description
dynamin 3 [Source:MGI Symbol;Acc:MGI:1341299]
Coordinates
chr1:162019828-162084144:-
Coord C1 exon
chr1:162084033-162084144
Coord A exon
chr1:162075775-162075786
Coord C2 exon
chr1:162019828-162019992
Length
12 bp
Sequences
Splice sites
3' ss Seq
CCTTGTGACTGCATGCACAGGGG
3' ss Score
3.65
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GAATGTATACAAAGACTATCGCTTCCTGGAGCTGGCCTGTGATTCCCAGGAAGATGTGGACAGCTGGAAGGCGTCTCTGCTCAGAGCCGGGGTCTACCCAGATAAATCTGTA
Seq A exon
GGGAGCAACAAA
Seq C2 exon
ACTGAAAATGATGAAAATGGACAAGCAGAAAACTTTTCCATGGACCCACAGTTGGAGAGGCAAGTGGAGACCATACGCAACCTAGTAGACTCCTACATGTCAATAATCAACAAATGCATCCGAGACTTAATTCCAAAAACAATAATGCATCTTATGATCAATAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040265_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=1.000 C2=0.309
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(27.9=76.3)
A:
NO
C2:
PF0221213=GED=PU(41.3=69.1)
Main Inclusion Isoform:
ENSMUST00000070330fB1338
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGCGTCTCTGCTCAGA
R:
TCCAACTGTGGGTCCATGGAA
Band lengths:
103-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types