HsaEX0020460 @ hg38
Exon Skipping
Gene
ENSG00000197959 | DNM3
Description
dynamin 3 [Source:HGNC Symbol;Acc:HGNC:29125]
Coordinates
chr1:172308728-172379182:+
Coord C1 exon
chr1:172308728-172308839
Coord A exon
chr1:172323329-172323340
Coord C2 exon
chr1:172379018-172379182
Length
12 bp
Sequences
Splice sites
3' ss Seq
CCTTGCGGCTACATGCATAGGGG
3' ss Score
4.06
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GAATGTATACAAAGACTATCGCTTCCTTGAGCTGGCATGTGATTCCCAGGAGGATGTCGACAGCTGGAAGGCATCTCTACTAAGAGCTGGGGTCTATCCTGACAAATCTGTA
Seq A exon
GGGAACAACAAA
Seq C2 exon
GCTGAAAATGATGAGAATGGACAAGCAGAAAACTTTTCCATGGACCCACAATTGGAGAGGCAAGTGGAGACCATTCGCAACCTCGTAGACTCCTACATGTCCATTATCAACAAATGTATCCGAGATCTAATTCCAAAAACAATAATGCACCTTATGATCAATAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197959_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=1.000 C2=0.291
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(27.9=76.3)
A:
NO
C2:
PF0221213=GED=PU(41.3=69.1)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGGGGTCTATCCTGACA
R:
CGAATGGTCTCCACTTGCCTC
Band lengths:
106-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development