MmuEX0018358 @ mm9
Exon Skipping
Gene
ENSMUSG00000030956 | Fam53b
Description
family with sequence similarity 53, member B [Source:MGI Symbol;Acc:MGI:1925188]
Coordinates
chr7:139903765-139963312:-
Coord C1 exon
chr7:139963261-139963312
Coord A exon
chr7:139951072-139951850
Coord C2 exon
chr7:139903765-139907685
Length
779 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTATTTATGCACCAGAAA
3' ss Score
4.92
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CACACGCCAAAGATGAGTCAAGGACCTACCCTCCTTTCCTGTGGAATTATGG
Seq A exon
AAAATGACAGATGGCGAGACCTGGATAGAAAATGCCCTCTTCAGATTGACCAGCCAAGCGCCAGCATCTGGGAATGTCTGCCTGAAAAGTGTCAGGATGGCTCCCTGTGGCACCAGGAGGCAGTGACTGCCTGTGCGGTGACCAGCCTAATCAAAGACCTCAACATAAATGACCACAATGGGAACCCCTCAGCTCCTCCCAGCAAACGCCAGTGCCGGTCACTATCCTTCTCTGATGAGATGTCCAGTTGCCGGACGTCATGGCGGCCCTTGGGGTCCAAAGTCTGGACTCCCGTGGAGAAGAGACGATGCTACAGCGGAGGCAGCGTCCAGCGCTACTCCAATGGCGTCAGCCCCATGCAGCGGAGCTCTAGCTTCAGCCTCCCTGCCAGGGCCAATGGGCTCTCTTCACCTTGCCACCAGTCGAGCCTGCACCACCGCTTTGGGGGGCAACCCTGCCAAGGAGCACCAGGCTCAGCCCCCTGTGGACAGGCGGGTGATAGCTGGAGCCCAGACCCACACCCAGTGGGAGGGGGCCGGCTGGACCTGCAGCGGTCCCTCTCTTGCTCGCATGAGCAGTTTTCCTTCCCAGAATACTGTCCCCCCTCAGCCAACAGCACACCTGCCTCAACGCCAGAGCTGGCAAGACGCTCCAGTGGGCTTGCCCGCAGCCGCTCTCAGCCCTGTGTCCTTAATGACAAGAAGATCGGTGTGAAACGGCGGCGTCCGGATGAAGTGCAGGAGCAAAGACCTTCTCTAGACCTTGCCAAGATGGCACAG
Seq C2 exon
AACTGTCAGACCTTCAGCAGCCTCAGTTGCCTGAACATGGGGGTGGACGACCACAGCTCCCAGAGCCCCTTTGCCCTCGTCAGCAGTACCCGATCCTGGACCGCATTGCTCTCAGCCTCCAGCCCAGGGGGCAGGACTCCTGCTGGGACCCCAGTTCCTGAGCCTGTTCCCCACTCCTTTGATGACCAGTTCACCTGCCAGGAGGACCTATCCTGTGACGAGTCAGATGGCTGCAGTCTAGATGAGGATTGCTGCAGGAAGGGGGATCCGGCCACATCCTGGCGGGACCGGGGAGCCTGCACGAACAGCCTCTGCTCTTTGGATGGCGAGCTGGACATTGAGCAGATAGAGAACAACTGAGGGCCCTGACCTGGGGAGGAGGCACTCCTCTAGGCCTTAGGTCACTCTAAGGGGGACCTGGCTCCTGGGTCTGACAGAGGCTCCTCCAAAAAATGGAGCCCACCCATTTTCAAAGGAACCAGCCATCACCCTGTAGTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030956_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=0.480 C2=0.292
Domain overlap (PFAM):
C1:
PF152421=FAM53=FE(29.8=100)
A:
PF152421=FAM53=FE(85.5=100)
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACCCTCCTTTCCTGTGGA
R:
CTCGCCATCCAAAGAGCAGAG
Band lengths:
358-1137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: