GgaEX1024104 @ galGal4
Exon Skipping
Gene
ENSGALG00000009718 | FAM53B
Description
family with sequence similarity 53, member B [Source:HGNC Symbol;Acc:HGNC:28968]
Coordinates
chr6:31636707-31658639:-
Coord C1 exon
chr6:31658588-31658639
Coord A exon
chr6:31650337-31651064
Coord C2 exon
chr6:31636707-31637033
Length
728 bp
Sequences
Splice sites
3' ss Seq
TTTTATCATTTCCGAACCAGAAA
3' ss Score
5.93
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CACACTCCAAAGATGAGTCAAGGACCTACCCTCTTCTCTTGTGGCATTATGG
Seq A exon
AAAATGACAGATGGGGAGACCTCAGCAGGAAATGTCCACTGCAGATCGAGCAGCCGGGCACCAACATCTGGGACTGCCTGGCCGACAAGGGCGAGGAGGGCACGCTGTGGCCGCGGGAGGCCACCAGCACCTGCTCGGTGACCAACCTCATCAAAGAGCTCAGCCTCAGCGATCCTCACAGCAACCCATCGGCGCCGCCCAGCAAGCGCCAGTGCCGCTCGCTGTCTTTTTCGGATGAAATGTCCAGCTGCAGGACATCATGGAGACCTTTGGGCTCCAAGGTCTGGACGCCGGTTGAGAAGAGGCGGTGTTACAGCGGGGGGAGCGTCCAGCGCTACTCCAACGGCTCGGCCACCATGCAGAGGAGCTCCAGCTTCAGCCTGCCGTCCCGCTCCCATCCTCTGGCCTCGTCCTGCGACCACCGCCCGGGCTGCCCGCCGAGGAGATCTGGGGCTGGAGGTGACGCCTGGAGCCCTGAGGGCGGCCGGGCGGACATGCAGCGCTCCCTGTCCTGCTCTCATGACCGCTTCTCCTCCTCGGAGCCCGGCCCGCCCTCAGCCAGCAGCACGCCGGCCTCCACGCCACAGCTGGGCCGCCGTGCCGGTGGGCTGTGCCGCAGCCGCTCGCAGCCCTGTGTCCTCAATGACAAGAAGGTGGGTGTCAAGCGGCGCCGGCCCCAGGATGCGCAGGAGCCACGGCCTTCGCTGGACCTGGCCAAGATGACGCAG
Seq C2 exon
AACCGCCAGACCTTCAACAGCCTTAGCAGCCTTAGCACCGCAGCAGAGGATAATACCCAGCGGCTCCCCAACACCCGGCCATGGACCACAGCCCCCCACTCCCCGGAGGTGATGCCGGGCAGGACCCCCGCCTGCACCCCAGTGCCAGAGCCGCGCACGCGGGGCGAGGAGCGCGGGGTGAGCCGGGACGACCTGTCCTGCGAGGAGTCTGACGAGGGCGGTGGGAAGGAGGATGACGGGACCCCGTGGAGGGGTGGCGGGGCGGGCACCCAGAGCCCCTTCCAGCTGGATGGAGAAATAGACATCGAGCAGATTGAAAACAACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009718_MULTIEX1-3/4=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.204 A=0.618 C2=1.000
Domain overlap (PFAM):
C1:
PF152421=FAM53=FE(27.0=100)
A:
PF152421=FAM53=FE(85.6=100)
C2:
NO
Main Skipping Isoform:
ENSGALT00000015817fB7460
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTCAAGGACCTACCCTCT
R:
TGTCTATTTCTCCATCCAGCTGG
Band lengths:
343-1071
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]