RnoEX0034614 @ rn6
Exon Skipping
Gene
ENSRNOG00000061348 | Fam53b
Description
family with sequence similarity 53, member B [Source:RGD Symbol;Acc:1310799]
Coordinates
chr1:204714473-204773141:-
Coord C1 exon
chr1:204773090-204773141
Coord A exon
chr1:204761727-204762505
Coord C2 exon
chr1:204714473-204718403
Length
779 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTATTTATGCACCAGAAA
3' ss Score
4.92
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CACACGCCAAAGATGAGTCAAGGACCTACCCTCCTCTCCTGCGGAATTATGG
Seq A exon
AAAATGACAGATGGCGAGACCTGGATAGAAAATGCCCTCTTCAGATTGACCAGCCAAGCGCCAGCATCTGGGAATGTCTGCCTGAAAAGTGTCAGGATGGCTCTCTGTGGCACCAGGAGGCGGTGACTGCCTGTGCAGTGACCAGTCTAATCAAAGACCTCAACATAAATGACCACAATGGGAACCCCTCAGCTCCTCCCAGTAAACGCCAGTGCCGGTCACTATCCTTCTCTGATGAGATGTCCAGTTGCCGGACGTCATGGCGGCCCTTGGGGTCCAAAGTCTGGACTCCCGTGGAGAAGAGACGATGCTACAGCGGAGGCAGTGTCCAGCGCTACTCCAATGGTGTCAGCCCCATGCAGCGGAGCTCTAGCTTCAGCCTCCCTGCCCGGGCTAATGGGCTCTCTTCACCTTGCCACCAGTCAAGCCTGCACCACCGCTTTGGGGGACAACCCTGCCGAGGAGCGCCAGGCTCCGCCCCTTGTGGGCGGGTGGGGGATAGCTGGAGCCCAGACCCACACCCTGTGGGAGGGGGCCGGCTGGACCTGCAAAGGTCTCTCTCCTGCTCACATGAGCAGTTTTCCTTCCCAGAATACTGTCCCCCCTCAGCCAACAGCACACCTGCCTCAACGCCAGAGCTGGCAAGACGCTCCAGTGGGCTTGCCCGCAGCCGCTCCCAGCCGTGTGTCCTTAATGACAAGAAGATCGGTGTGAAACGGCGGCGTCCAGACGAAGTGCAGGAGCAAAGACCTTCGCTAGACCTTGCCAAGATGGCACAG
Seq C2 exon
AACTGTCAGACCTTCAGCAGCCTCAGTTGCCTGAACATGGGGGTGGACGAGCACAGCTCTCAGAGCCCCTTTGCCCTCGTCAGCAGTACCCGATCCTGGACCGCATTGCTCTCAGCCTCCAGCCCAGGGGGCAGGACTCCCGCTGGGACCCCAGTTCCTGAGCCTGTTCCGGAGCCTGTCCCCCACTCCTTTGATGACCAGTTTACGGGCCAGGAGGACCTATCCTGTGATGAGTCAGATGGCTGCAGTCTGGATGAGGATTGCTGCAGGAAGGGGGAGCCGGCCACAGCCTGGCGGGACAGGGGAGCCTGCAGGAACAGCCTCTGCTCTCTGGACGGCGAGCTGGACATTGAGCAGATAGAGAACAACTGAGGGCCATGGCCATGGTCTGGGGAGGAGGCTTTCCTCTAGGCACTCCAGAGGGGCTCCTGGCTCCTGGGTCTGGCAAAAGCTCCCCGAAAAAGGAGCCCAGCCATTTTCCAAGGAACCAGCCAGCACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061348-'12-17,'12-11,15-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=0.464 C2=0.358
Domain overlap (PFAM):
C1:
PF152421=FAM53=FE(29.8=100)
A:
PF152421=FAM53=FE(85.5=100)
C2:
NO
Main Skipping Isoform:
ENSRNOT00000077956fB5284
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCTCTCCTGCGGAATTA
R:
GCTGTTCCTGCAGGCTCC
Band lengths:
345-1124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]