BtaEX6101356 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012970 | FAM53B
Description
family with sequence similarity 53, member B [Source:HGNC Symbol;Acc:HGNC:28968]
Coordinates
chr26:44619642-44635327:-
Coord C1 exon
chr26:44635273-44635327
Coord A exon
chr26:44620513-44621291
Coord C2 exon
chr26:44619642-44619674
Length
779 bp
Sequences
Splice sites
3' ss Seq
TTTTGTCATTTCCAAACTAGAAA
3' ss Score
6.54
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CACACGCCAAAGAAGATGAGTCAAGGACCGACACTTTTCTCTTGTGGAATCATGG
Seq A exon
AAAATGACAGATGGCGAGACCTGGACAGGAAGTGCCCCCTTCAGATCGACCAGCCGAGCGCCAGCATCTGGGAGTGCCTGCCGGACAAGTGCCAGGACAGCGCCCTGTGGCACCGGGAGGCGGCCACCACCTGCGCGGTCACCAACCTGATCAAAGACCTCAGCCTCAGTGACCACAACGGACACCCGTCCGCGCCCCCCAGCAAGCGCCAGTGCCGGTCGCTGTCCTTCTCGGACGAGATGGCCAGCTGCCGGACGTCGTGGAGGCCCTTGGGGTCCAAAGTCTGGACGCCGGTGGAGAAGAGGCGCTGCTACAGCGGGGGCAGCGTGCAGCGTTACTCCAACGGCTTCGGCACCATGCAGCGGAGCTCCAGCTTCAGCCTCCCGTCCCGCGCCAGCACGCTGTCCTCGCCCTACGACCCGGCGGGACTCCACCCGCGGCCCGGCGGCCCGCCCGGCCCGGGGGTGCTGGGCCCGGCCACCTGCGGACAGGCAGGCGACCTCTGGGGCCCCGCGGCGAGCCCCGTGGGCGGCGGCCGGCTGGATATGCAGCGCTCCCTGTCCTGCTCGCATGAGCAGTTCTCCTTTGCGGAGTACTGCCCGCCCTCCGCCAGCAGCACCCCCGCCTCGACGCCAGAGCCGGCCAGGCGCTCGGGCGGGCTGGCCCGCAGCCGCTCCCAGCCCTGCGTCCTTAATGACAAGAAGGTGGGCATCAAGCGGCGGCGCCCCGAGGAGGCACAGGAGCAGAGGCCCTCCCTGGATCTTGCCAAGATGGCACAG
Seq C2 exon
TCTGAGCTTCAGTCGCGGCTGGGCTTGAGGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012970-'15-11,'15-9,17-11=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.526 A=0.527 C2=1.000
Domain overlap (PFAM):
C1:
PF152421=FAM53=FE(5.9=100)
A:
PF152421=FAM53=FE(85.2=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]