MmuEX0024728 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108423401-108433001:+
Coord C1 exon
chr6:108423401-108423654
Coord A exon
chr6:108431217-108431417
Coord C2 exon
chr6:108432891-108433001
Length
201 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCTTTGTTCATGCAGAAT
3' ss Score
10.18
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
CCAAAGAGCCCACAACACAGATAACAGAAGAGGTCCGGGATCAGCTCCTGGAAGCATCTGCTGCCACCAGGAAAGCCTTTACCACCTTCCGGAGGGAGGCCGACCCTGATGACCATTACCAGTCTGGGGAGGGCACCCAGGCTACAACCGACAAAGCCAAGGATGACCTAGAGATGAGCGCTGTCATCACCATCATGCAGCCTATCCTGCGCTTCCTGCAGCTGCTGTGTGAAAACCACAACCGAGATCTGCAG
Seq A exon
AATTTCCTTCGTTGCCAAAATAATAAGACCAACTACAATTTGGTGTGTGAGACACTGCAGTTTCTGGACTGTATTTGTGGGAGCACAACCGGAGGCCTTGGTCTTCTTGGACTGTACATAAATGAAAAGAATGTAGCACTTATCAACCAAACCCTGGAGAGTCTGACGGAGTACTGTCAAGGGCCTTGCCATGAGAACCAG
Seq C2 exon
AACTGCATCGCCACCCACGAGTCCAATGGCATCGATATCATCACAGCCCTCATCCTCAATGATATCAACCCTCTGGGAAAGAAGCGGATGGACCTGGTGTTAGAACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'53-56,'53-55,54-56
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=PU(24.2=34.1)
A:
PF084546=RIH_assoc=FE(55.0=100)
C2:
PF084546=RIH_assoc=PD(18.3=59.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTGCTGCCACCAGGAAAG
R:
GTCCATCCGCTTCTTTCCCAG
Band lengths:
293-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: