RnoEX0045400 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140505445-140514245:+
Coord C1 exon
chr4:140505445-140505698
Coord A exon
chr4:140512045-140512245
Coord C2 exon
chr4:140514135-140514245
Length
201 bp
Sequences
Splice sites
3' ss Seq
TCTTGTGTTCCCCATTGCAGAAT
3' ss Score
11.29
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
CCAAAGAGCCCACAACACAGATAACAGAAGAGGTCCGGGATCAGCTCTTGGAAGCATCTGCTGCCACCAGAAAAGCCTTTACCACCTTCCGGAGGGAGGCCGACCCTGATGACCATTACCAATCTGGGGAGGGCACCCAGGCTACAACGGACAAAGCCAAGGATGACCTAGAGATGAGTGCAGTCATCACCATCATGCAGCCTATCCTGCGCTTCCTGCAGCTCCTGTGTGAAAACCACAACCGCGATCTGCAG
Seq A exon
AATTTCCTTCGTTGCCAAAATAATAAGACCAACTACAACTTGGTGTGTGAGACACTGCAGTTTCTGGACTGTATCTGTGGGAGCACAACTGGAGGCCTTGGTCTTCTCGGACTGTACATAAATGAAAAGAATGTAGCTCTTATCAACCAAACCCTGGAGAGTCTGACTGAGTACTGTCAAGGGCCTTGCCATGAAAACCAG
Seq C2 exon
AACTGCATCGCCACCCACGAGTCCAATGGCATCGATATCATCACAGCCCTCATCCTTAACGATATCAACCCTCTGGGGAAGAAACGGATGGACCTGGTGTTAGAACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'75-78,'75-77,76-78
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=PU(24.2=34.1)
A:
PF084546=RIH_assoc=FE(55.0=100)
C2:
PF084546=RIH_assoc=PD(18.3=59.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCTCTTGGAAGCATCTGC
R:
TCCATCCGTTTCTTCCCCAGA
Band lengths:
306-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]