GgaEX1030856 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18495907-18501838:+
Coord C1 exon
chr12:18495907-18496160
Coord A exon
chr12:18500783-18500983
Coord C2 exon
chr12:18501728-18501838
Length
201 bp
Sequences
Splice sites
3' ss Seq
CCAACTGTAACGTGCTGCAGAAT
3' ss Score
4.16
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
TGAGGGAGCCCATGACCCAAATTACAGAGGAAGTCCGGGATCAGTTACTGGAGGCCTCTGCAGCTACAAGAAAGGCGTACAGCACCTACCGGAGGGAAGCTGATTCTGATGACCATTATTCAGCGGCAGAAGGCGCACAGTCAGCAGCAGACAAGAGCAAAGATGACCTGGAGATGAGTGCTGTGATCTCCATAATGCAACCCATCCTCCGCTTCTTGCAGCTGCTCTGTGAAAACCACAACCGGGATTTGCAG
Seq A exon
AATTTCCTTCGCTGCCAGAACAACAAGACCAACTACAACTTGGTGTGTGAAACGCTGCAGTTCCTGGACTGCATCTGTGGAAGCACAACTGGTGGGCTTGGACTTCTTGGTCTGTATATCAATGAGAAAAACGTAGCGCTGATCAACCAGACGCTGGAAAGCTTGACTGAGTACTGCCAGGGGCCCTGCCACGAAAACCAG
Seq C2 exon
AACTGTATTGCTACTCATGAGTCCAACGGTATTGACATCATCACAGCATTAATTCTCAATGATATCAACCCTTTGGGAAAGAAGAGGATGGACCTCGTGTTAGAACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'64-69,'64-68,65-69
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.247 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=PU(24.2=34.1)
A:
PF084546=RIH_assoc=FE(55.0=100)
C2:
PF084546=RIH_assoc=PD(18.3=59.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCAGCTACAAGAAAGGCG
R:
AGGTCCATCCTCTTCTTTCCCA
Band lengths:
293-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]