DreEX6023167 @ danRer10
Exon Skipping
Gene
ENSDARG00000014655 | itpr1a
Description
inositol 1,4,5-trisphosphate receptor, type 1a [Source:ZFIN;Acc:ZDB-GENE-070604-3]
Coordinates
chr6:39976884-39978561:+
Coord C1 exon
chr6:39976884-39977137
Coord A exon
chr6:39978179-39978379
Coord C2 exon
chr6:39978451-39978561
Length
201 bp
Sequences
Splice sites
3' ss Seq
TTCTCCTCTTTTCCCCACAGAAT
3' ss Score
12.79
5' ss Seq
CAGGCATGT
5' ss Score
2.05
Exon sequences
Seq C1 exon
GTAAAGACTCCGGTGTGGTGGTGACAGATGATGCTCGTGAGCAGCTGTTGGAGGCTTCAGCTGCGACTAAGAAGGCCTTTGGTTCATATCGTCGAGATGCTGATCCCGAGGAGACGTTTGGCACGGCTGATGGAGATAAAGGAGGTGGAGATAAAGGCACAGAGCAGGGCGAGATGAGCCCTGTCATCCTCATAATGCAGCCAATCCTGCGCTTCCTGCAGCTGCTGTGCGAAAACCACAATCGAGACCTGCAG
Seq A exon
AATTTTCTGCGCTGTCAGAACAATAAAAACAACTATAATCTGGTGTGTGAGACGCTGCAGTTCCTGGACTGTATCTGTGGCAGCACAACAGGAGGCCTGGGGCTGTTAGGACTCTACATCAACCAGCATAACGTAGCGCTCATTAATCAGACTGTAGAGAGCCTCACTGAATACTGTCAAGGTCCCTGCCATGACAATCAG
Seq C2 exon
AATTGCATTGCCACCCATGAGTCTAATGGCATCGACATCATTATTGCACTGATTCTGAATGATATTAATCCACTGGGCAGGAAGAGAATGGATCTGGTTCTAGAACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014655-'46-55,'46-54,47-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.376 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=PU(24.2=34.1)
A:
PF084546=RIH_assoc=FE(55.0=100)
C2:
PF084546=RIH_assoc=PD(18.3=59.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCTTCAGCTGCGACTAAG
R:
TTCTCTTCCTGCCCAGTGGAT
Band lengths:
292-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]