DreEX0040328 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35575694-35582678:-
Coord C1 exon
chr11:35582428-35582678
Coord A exon
chr11:35580342-35580542
Coord C2 exon
chr11:35575694-35575804
Length
201 bp
Sequences
Splice sites
3' ss Seq
TCCCCCCGCTTGTTCCCTAGAAC
3' ss Score
10.59
5' ss Seq
CAGGTGATC
5' ss Score
4.28
Exon sequences
Seq C1 exon
TCAAAGATGTGGCTGTTATAACCGAAGAAGTGCGAGAGCAGCTACTAGAAGCCTCTACGGTCACTAAGAAGGCCTTCAGCACTTACAGAAGAGAAGCGGACGCGGATGAGCATCTGAATGCTACGGAGGGACCAAGCAGCACAGCTGAGAAGAACCAGGACGAGAACGAGATGAGCGTCATCATCACCATCATGCAGCCAATCCTGCGCCTCATGCAGCTGCTCTGCGAAAACCACAACCGAGAGCTGCAG
Seq A exon
AACTTCCTTCGCTGTCAGAACAACAAAAACAACTACAACCTGGTGTGCGAGACGCTGCAGTTCCTAGATTGTATATGCGGCAGCACTACAGGAGGCCTGGGGCTGCTGGGACTCTACATTAATGAGAAGAACGTCGCTCTTATAAACCAGACTGTGGAGAGTCTGACTGAATACTGCCAGGGCCCTTGCCATGAAAACCAG
Seq C2 exon
AACTGCATTGCCACACATGAATGTAACGGCATCGACATCATCATCGCCCTCATCCTCAATGACATCAACCCTCTCGGCAAGAAGAGAATGGACTTGGTGCTGGAGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'52-51,'52-50,53-51
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.262 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=PU(25.4=36.9)
A:
PF084546=RIH_assoc=FE(54.1=100)
C2:
PF084546=RIH_assoc=PD(18.0=59.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCACTAAGAAGGCCTTCAGC
R:
TAGCTCCAGCACCAAGTCCAT
Band lengths:
301-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]