MmuEX0024731 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108299592-108304699:+
Coord C1 exon
chr6:108299592-108299678
Coord A exon
chr6:108301987-108302145
Coord C2 exon
chr6:108304601-108304699
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTGATGGATTTTTAGCTC
3' ss Score
4.81
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
CATGCTGCAGACTTGGAAAAGAAGCAGAATGAGACAGAAAACAGGAAATTGTTGGGGACCGTCATCCAATATGGCAACGTGATCCAG
Seq A exon
CTCCTGCATTTGAAAAGCAATAAATACCTGACTGTGAATAAGAGGCTCCCAGCCTTGCTAGAGAAGAACGCCATGAGGGTGACGTTGGACGAGGCTGGAAATGAAGGGTCCTGGTTTTACATTCAACCATTCTACAAGCTTCGCTCCATCGGAGACAGT
Seq C2 exon
GTGGTCATAGGCGACAAGGTAGTTTTGAATCCTGTCAATGCTGGCCAGCCTCTACATGCCAGCAGTCATCAGCTGGTGGATAACCCAGGCTGCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'9-9,'9-8,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.000 C2=0.121
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(12.4=100)
A:
PF087096=Ins145_P3_rec=FE(23.0=100)
C2:
PF087096=Ins145_P3_rec=FE(14.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCTGCAGACTTGGAAAAGA
R:
CTCATTGCAGCCTGGGTTATCC
Band lengths:
186-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: