BtaEX6093933 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21822875-21827237:-
Coord C1 exon
chr22:21827151-21827237
Coord A exon
chr22:21824969-21825127
Coord C2 exon
chr22:21822875-21822973
Length
159 bp
Sequences
Splice sites
3' ss Seq
ATTCTCTTGGTGGTTTTCAGCTA
3' ss Score
7.71
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
CATGCTGCAGACTTGGAAAAGAAGCAGAATGAGACTGAAAACAGGAAGTTGCTGGGTACCGTGATCCAGTATGGCAACGTGATCCAG
Seq A exon
CTACTGCATCTGAAAAGTAATAAATACCTAACTGTGAATAAGAGGCTTCCGGCTCTGCTGGAGAAGAATGCCATGAGAGTGACATTGGATGAGGCCGGAAACGAAGGGTCCTGGTTTTACATTCAGCCATTCTACAAGCTGCGATCCATCGGAGACAGT
Seq C2 exon
GTGGTCATAGGTGACAAGGTTGTTCTGAACCCCGTGAATGCCGGCCAGCCCTTACATGCCAGCAGCCATCAGCTGGTGGATAACCCAGGCTGCAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=0.000 C2=0.121
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(16.0=100)
A:
PF087096=Ins145_P3_rec=FE(29.7=100)
C2:
PF087096=Ins145_P3_rec=FE(18.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCTGCAGACTTGGAAAAGA
R:
CTCGTTGCAGCCTGGGTTATC
Band lengths:
186-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]