GgaEX6010813 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18426856-18429396:+
Coord C1 exon
chr12:18426856-18426942
Coord A exon
chr12:18427895-18428053
Coord C2 exon
chr12:18429298-18429396
Length
159 bp
Sequences
Splice sites
3' ss Seq
AACTCTAATTCTTATTCTAGCTG
3' ss Score
6.32
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
CATGCAGCCGATTTGGAAAAGAAGCAGAATGAAACTGAAAACAGAAAGCTGCTGGGAACAGTTATCCAGTATGGCAATGTGATCCAG
Seq A exon
CTGCTTCACTTAAAAAGTAACAAATACTTAACAGTAAATAAGAGACTGCCAGCTCTACTAGAGAAGAATGCCATGAGGGTGACCTTGGATGAAGCTGGAAATGAAGGCTCCTGGTTCTACATACAGCCATTCTACAAACTGCGCTCCATTGGAGACAGC
Seq C2 exon
GTTGTCATTGGAGACAAAGTAGTCCTGAATCCTGTGAACGCTGGCCAGCCTCTTCATGCTAGTAGTCATCAGCTTGTTGATAATCCGGGATGCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'8-13,'8-10,9-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.168 A=0.000 C2=0.121
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(12.4=100)
A:
PF087096=Ins145_P3_rec=FE(23.0=100)
C2:
PF087096=Ins145_P3_rec=FE(14.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCAGCCGATTTGGAAAAGA
R:
CTCATTGCATCCCGGATTATCA
Band lengths:
186-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]