GgaEX6010813 @ galGal3
Exon Skipping
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19070492-19073032:+
Coord C1 exon
chr12:19070492-19070578
Coord A exon
chr12:19071531-19071689
Coord C2 exon
chr12:19072934-19073032
Length
159 bp
Sequences
Splice sites
3' ss Seq
AACTCTAATTCTTATTCTAGCTG
3' ss Score
6.32
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
CATGCAGCCGATTTGGAAAAGAAGCAGAATGAAACTGAAAACAGAAAGCTGCTGGGAACAGTTATCCAGTATGGCAATGTGATCCAG
Seq A exon
CTGCTTCACTTAAAAAGTAACAAATACTTAACAGTAAATAAGAGACTGCCAGCTCTACTAGAGAAGAATGCCATGAGGGTGACCTTGGATGAAGCTGGAAATGAAGGCTCCTGGTTCTACATACAGCCATTCTACAAACTGCGCTCCATTGGAGACAGC
Seq C2 exon
GTTGTCATTGGAGACAAAGTAGTCCTGAATCCTGTGAACGCTGGCCAGCCTCTTCATGCTAGTAGTCATCAGCTTGTTGATAATCCGGGATGCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=0.000 C2=0.121
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(12.4=100)
A:
PF087096=Ins145_P3_rec=FE(23.0=100)
C2:
PF087096=Ins145_P3_rec=FE(14.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCAGCCGATTTGGAAAAGA
R:
CTCATTGCATCCCGGATTATCA
Band lengths:
186-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]