MmuEX0025181 @ mm10
Exon Skipping
Gene
ENSMUSG00000052726 | Kcnt2
Description
potassium channel, subfamily T, member 2 [Source:MGI Symbol;Acc:MGI:3036273]
Coordinates
chr1:140552960-140573678:+
Coord C1 exon
chr1:140552960-140553071
Coord A exon
chr1:140570382-140570483
Coord C2 exon
chr1:140573595-140573678
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTTCCTCTGATTCTGAACAGAAA
3' ss Score
8.48
5' ss Seq
CAGGTACGC
5' ss Score
10.12
Exon sequences
Seq C1 exon
GTTGTTTTCAAGTCTCAGTATCATCACTGAGCTTACGCATCCAGCAAATATGAGATTCATGCAATTCAGAGCCAAGGATTGTTACTCTCTCGCGCTTTCAAAACTGGAAAAG
Seq A exon
AAAGAAAGAGAACGAGGTTCTAACTTGGCCTTTATGTTTCGACTGCCTTTTGCTGCGGGAAGAGTGTTCAGCATCAGTATGTTAGACACCCTTCTTTATCAG
Seq C2 exon
TCATTTGTGAAAGATTATATGATTTCTATCACCAGACTTCTTTTGGGACTGGACACCATACCAGGATCGGGGTTTCTTTGTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052726_MULTIEX1-1/6=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTTTTCAAGTCTCAGTATCATCA
R:
AACAAAGAAACCCCGATCCTGG
Band lengths:
194-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types