GgaEX0003082 @ galGal3
Exon Skipping
Gene
ENSGALG00000002451 | KCNT2
Description
NA
Coordinates
chr8:2804202-2810946:+
Coord C1 exon
chr8:2804202-2804313
Coord A exon
chr8:2809485-2809586
Coord C2 exon
chr8:2810863-2810946
Length
102 bp
Sequences
Splice sites
3' ss Seq
TATTTTTAATTTCCATACAGAAA
3' ss Score
7.06
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GTTGTTCTCAAGCCTAAGCATTATCACAGAACTAACTCACCCTGCCAATATGAGATTCATGCAATTCAGAGCCAAAGACTGCTATTCTCTTGCTCTATCCAAATTGGAAAAG
Seq A exon
AAAGAACGGGAGAAGGGATCTAATTTAGCATTTATGTTTCGACTGCCCTTTGCTGCTGGCAGGGTTTTCAGCATCAGTATGTTGGACACACTGCTGTACCAG
Seq C2 exon
TCATTTGTGAAAGATTATATGATCTCTATCACAAGACTTCTTCTGGGACTTGATACAACACCAGGATCTGGGTTTCTTTGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002451-'37-43,'37-40,39-43
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTTCTCAAGCCTAAGCATT
R:
TGAACAAAGAAACCCAGATCCTG
Band lengths:
196-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]