RnoEX0046239 @ rn6
Exon Skipping
Gene
ENSRNOG00000013312 | Kcnt2
Description
potassium sodium-activated channel subfamily T member 2 [Source:RGD Symbol;Acc:735074]
Coordinates
chr13:57447578-57469474:+
Coord C1 exon
chr13:57447578-57447689
Coord A exon
chr13:57458312-57458413
Coord C2 exon
chr13:57469391-57469474
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTTCCTCTGATTCCGAACAGAAA
3' ss Score
8.08
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GTTGTTTTCGAGTCTCAGTATTATCACTGAGCTTACTCATCCAGCAAATATGAGATTCATGCAATTCAGAGCCAAGGACTGTTACTCTCTTGCACTTTCAAAACTGGAAAAG
Seq A exon
AAAGAGCGAGAACGAGGTTCTAACCTGGCCTTCATGTTCCGACTGCCTTTCGCTGCGGGGAGAGTGTTCAGCATCAGTATGCTGGACACGCTGCTTTATCAG
Seq C2 exon
TCATTTGTGAAAGATTATATGATTTCTATCACCAGACTTCTTTTGGGACTGGACACCATACCAGGATCGGGGTTTCTTTGTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013312-'34-40,'34-38,36-40
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTTTTCGAGTCTCAGTATTATCA
R:
AACAAAGAAACCCCGATCCTGG
Band lengths:
194-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]