DreEX6082920 @ danRer10
Exon Skipping
Gene
ENSDARG00000079484 | kcnt1
Description
potassium channel, subfamily T, member 1 [Source:ZFIN;Acc:ZDB-GENE-091231-1]
Coordinates
chr21:4720532-4723792:-
Coord C1 exon
chr21:4723681-4723792
Coord A exon
chr21:4723496-4723597
Coord C2 exon
chr21:4720532-4720615
Length
102 bp
Sequences
Splice sites
3' ss Seq
AATGTGTGTTCGATCAACAGAAG
3' ss Score
6.57
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTTGTTTCCGAGTCTCAGTATAATCACAGAACTGACTCACCCGTCCAACATGAGATTCATGCAGTTCAGAGCGAAGGACTGCTACTCGCTCGCCCTGTCCAAACTAGAGAAG
Seq A exon
AAGGAACGTGACAAAGGCTCAAATCTGGCCTTCATGTTTCGCCTTCCCTTTGCTGCTGGCCGAGTCTTCAGTATCAGCATGCTGGACACACTCCTGTACCAG
Seq C2 exon
TGTTTTGTGAAGGACTACATGATCCCCATAGCCAGATTACTGCTGGGATTGGACACCACACCTGGATCTGGATACCTGTGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079484-'26-31,'26-30,27-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCCGAGTCTCAGTATAATCACA
R:
AGCACACAGGTATCCAGATCCA
Band lengths:
194-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]