RnoEX6015925 @ rn6
Exon Skipping
Gene
ENSRNOG00000017283 | Kcnt1
Description
potassium sodium-activated channel subfamily T member 1 [Source:RGD Symbol;Acc:621106]
Coordinates
chr3:3355483-3357145:+
Coord C1 exon
chr3:3355483-3355594
Coord A exon
chr3:3356669-3356770
Coord C2 exon
chr3:3357062-3357145
Length
102 bp
Sequences
Splice sites
3' ss Seq
CGAGGATCCCTTTCTTGCAGCAA
3' ss Score
5.62
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GCTTTTCCCCAGTCTCAGCATCACCACGGAGCTCACGCACCCTTCCAACATGCGGTTCATGCAGTTCCGGGCCAAGGACAGCTACTCTCTGGCTCTTTCCAAACTTGAAAAG
Seq A exon
CAAGAACGGGAGAATGGCTCCAACCTGGCCTTCATGTTCCGCCTGCCATTTGCTGCTGGTCGGGTGTTTAGTATCAGCATGTTGGATACGCTGCTCTACCAG
Seq C2 exon
TCCTTCGTGAAGGACTACATGATCACCATCACCAGGCTGCTGCTGGGCCTTGACACGACGCCAGGCTCTGGCTACCTCTGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017283-'31-48,'31-45,32-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTTCCCCAGTCTCAGCAT
R:
CACAGAGGTAGCCAGAGCCT
Band lengths:
194-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]