GgaEX1056941 @ galGal4
Exon Skipping
Gene
ENSGALG00000001645 | Segment
Description
Potassium channel subfamily T member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8QFV0]
Coordinates
chr17:8217824-8218749:-
Coord C1 exon
chr17:8218638-8218749
Coord A exon
chr17:8217980-8218081
Coord C2 exon
chr17:8217824-8217907
Length
102 bp
Sequences
Splice sites
3' ss Seq
GATTGTCTTTCCTCTTCCAGAAA
3' ss Score
10.99
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
GCTCTTTCCCAGCCTCAGCATCATCACAGAGCTGACCCATCCCTCCAACATGAGGTTCATGCAGTTCAGAGCAAAGGACAGCTACTCCTTAGCCCTTTCCAAGCTAGAGAAG
Seq A exon
AAAGAGCGCGAGAATGGCTCCAACCTGGCCTTCATGTTCCGCCTGCCCTTCGCTGCGGGGAGGGTCTTCAGCATCAGCATGCTGGACACGCTGCTCTACCAG
Seq C2 exon
TCATTTGTGAAGGACTACATGATCACCATCACCCGGCTGCTGCTGGGCCTCGACACCACGCCGGGCTCTGGCTACCTCTGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTTCCCAGCCTCAGCATC
R:
GCACAGAGGTAGCCAGAGCC
Band lengths:
194-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]