BtaEX0018889 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018975 | KCNT1
Description
potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr11:103427164-103431191:+
Coord C1 exon
chr11:103427164-103427275
Coord A exon
chr11:103430638-103430739
Coord C2 exon
chr11:103431108-103431191
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGAGCCGCCCTGTCTTGCAGAGG
3' ss Score
8.4
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GCTCTTCCCCAGTCTCAGCATCACCACCGAGCTCACCCACCCGTCCAACATGCGGTTCATGCAGTTTCGCGCCAAGGACAGCTACTCTCTGGCTCTCTCTAAACTGGAGAAG
Seq A exon
AGGGAGCGTGAGAACGGCTCCAACCTGGCCTTCATGTTCCGCCTGCCCTTCGCCGCCGGCCGCGTCTTCAGCATCAGCATGCTGGACACACTGCTGTATCAG
Seq C2 exon
TCCTTCGTGAAGGACTACATGATCCCCATCACCAGGCTGTTGCTGGGCTTGGACACCACGCCGGGCTCCGGCTACCTCTGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018975-'35-35,'35-34,38-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCCCAGTCTCAGCATCA
R:
CGCACAGAGGTAGCCGGAG
Band lengths:
194-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development