MmuEX6099656 @ mm10
Exon Skipping
Gene
ENSMUSG00000058740 | Kcnt1
Description
potassium channel, subfamily T, member 1 [Source:MGI Symbol;Acc:MGI:1924627]
Coordinates
chr2:25908045-25909677:+
Coord C1 exon
chr2:25908045-25908156
Coord A exon
chr2:25909205-25909306
Coord C2 exon
chr2:25909594-25909677
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGAGGACCCCTTCCTTGCAGCAA
3' ss Score
5.91
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GCTTTTCCCCAGTCTCAGCATCACCACGGAGCTCACACACCCTTCCAACATGCGGTTCATGCAGTTCCGTGCCAAGGACAGCTACTCTCTGGCTCTTTCCAAACTTGAAAAG
Seq A exon
CAAGAACGGGAGAACGGCTCCAACCTGGCCTTCATGTTCCGCCTGCCATTTGCTGCTGGTCGAGTATTTAGTATCAGCATGTTGGATACACTGCTCTACCAG
Seq C2 exon
TCCTTCGTGAAGGACTACATGATCACCATCACCAGGCTGCTCTTGGGCCTTGATACTACACCAGGCTCCGGCTACCTCTGTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058740-'45-72,'45-69,47-72
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTTCCCCAGTCTCAGCAT
R:
TGCACAGAGGTAGCCGGAG
Band lengths:
196-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types