DreEX6025921 @ danRer10
Exon Skipping
Gene
ENSDARG00000075812 | kcnt2
Description
potassium channel, subfamily T, member 2 [Source:ZFIN;Acc:ZDB-GENE-130530-783]
Coordinates
chr2:12244922-12247819:-
Coord C1 exon
chr2:12247708-12247819
Coord A exon
chr2:12247508-12247609
Coord C2 exon
chr2:12244922-12245005
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTCTTCATGGAACAGAAA
3' ss Score
6.17
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTTGTTCTCTGGTCTGAACATCATCACTGAGTTAACTCACTCTGCTAACATGAGATTCATGCAGTTCAGCACAAAGGACTGTCATTCCCTGGCATTCTCCAAACTAGCAAAG
Seq A exon
AAAGAAAGAGAAAAAGGCTCAAACCTGTCCTTCATATTTCACCTTCCGTTTGCTGCTGGTAGGGTTTTCAGCATCAGCATGCTAGACACACTCCTCTACCAG
Seq C2 exon
TCTTTTGTTAAAGATTATATGATAACAATCACCAGGCTCCTGCTGGGGTTGGAAACTACACCACAGTCTGGTTTCCTGTGTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075812-'23-23,'23-22,24-23=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCTCTGGTCTGAACATCATCAC
R:
GGCACACAGGAAACCAGACTG
Band lengths:
194-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]