MmuEX0028788 @ mm9
Exon Skipping
Gene
ENSMUSG00000030605 | Mfge8
Description
milk fat globule-EGF factor 8 protein [Source:MGI Symbol;Acc:MGI:102768]
Coordinates
chr7:86287755-86290264:-
Coord C1 exon
chr7:86290133-86290264
Coord A exon
chr7:86288164-86288274
Coord C2 exon
chr7:86287755-86287936
Length
111 bp
Sequences
Splice sites
3' ss Seq
CTGCTTTTCTCTCCTACCAGAGA
3' ss Score
9.64
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GACCATGCTCCCCAAACCCTTGCTACAATGATGCCAAATGTCTGGTGACTTTGGACACACAGCGTGGGGACATCTTCACCGAATACATCTGCCAGTGCCCTGTGGGCTACTCGGGCATCCACTGTGAAACCG
Seq A exon
AGACCAACTACTACAACCTGGATGGAGAATACATGTTCACCACAGCCGTCCCCAATACTGCCGTCCCCACCCCGGCCCCCACCCCCGATCTTTCCAACAACCTAGCCTCCC
Seq C2 exon
GTTGTTCTACACAGCTGGGCATGGAAGGGGGCGCCATTGCTGATTCACAGATTTCCGCCTCGTCTGTGTATATGGGTTTCATGGGCTTGCAGCGCTGGGGCCCGGAGCTGGCTCGTCTGTACCGCACAGGGATCGTCAATGCCTGGACAGCCAGCAACTATGATAGCAAGCCCTGGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030605_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.184 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=86.7)
A:
NO
C2:
PF0075420=F5_F8_type_C=PU(31.9=72.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGTGGGGACATCTTCAC
R:
TGGATCCAGGGCTTGCTATCA
Band lengths:
254-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types