MmuEX0032292 @ mm9
Exon Skipping
Gene
ENSMUSG00000049134 | Nrap
Description
nebulin-related anchoring protein [Source:MGI Symbol;Acc:MGI:1098765]
Coordinates
chr19:56463239-56464527:-
Coord C1 exon
chr19:56464296-56464527
Coord A exon
chr19:56463880-56463974
Coord C2 exon
chr19:56463239-56463326
Length
95 bp
Sequences
Splice sites
3' ss Seq
ATCTTTTCTGTGACTTTCAGACA
3' ss Score
8.52
5' ss Seq
CGCGTAAGT
5' ss Score
9.93
Exon sequences
Seq C1 exon
GCAGAAAGTCAGCTCAGTGTAGGAAAGTGGAAGTTGGATTCCGAAGGCTCCAGGCGTCCCGAGGAGTTTCATAGTGGTGGGCTTTTGAAGGTGGTACCGACCCAAGTGGAGGTTCTAGTGGATTTTGTCTGTTGCTTCTCCCTGTCTCCCACACTCCAAGATGAATGTGCAGGCCTGCTCTAGGTGTGGCTATGGGGTTTACCCTGCTGAGAAGATCAGCTGCATAGATCAG
Seq A exon
ACATGGCACAAAGCATGTTTTCACTGTGAAGTCTGTAAGATGATGCTTTCTGTTAATAACTTCGTGAGTCACCAGAAAAAGCCGTACTGTCACGC
Seq C2 exon
CCACAACCCTAAGAACAACACGTTCACTAGCGTCTACCACACACCCTTAAATCTAACCTTGAAGAAGTCTGTGGCAGCCATGGGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049134_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
PF0041217=LIM=PU(32.1=75.0)
A:
PF0041217=LIM=FE(55.4=100)
C2:
PF0041217=LIM=PD(8.9=16.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTCTCCCACACTCCAAGA
R:
CATGGCTGCCACAGACTTCTT
Band lengths:
174-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types