BtaEX6100902 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019327 | NRAP
Description
nebulin-related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
Coordinates
chr26:34413540-34414796:-
Coord C1 exon
chr26:34414577-34414796
Coord A exon
chr26:34414189-34414283
Coord C2 exon
chr26:34413540-34413627
Length
95 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTATTTGGTTTCTAGATA
3' ss Score
9.31
5' ss Seq
CGCGTAAGT
5' ss Score
9.93
Exon sequences
Seq C1 exon
GAGAGTGGAAGTTGGATACTGAACGGTCAAGGTGCCCACAGGAATTTAATAGGAGTCAGGACTTTGGAGGCTTGAACAACCAGACGGTGGCTTCTCTTTGGATTTCTTGCCTGTTACCGATCTTGGTCTTCTCTCTTCAGACTTCACGATGAATGTGCAGGCTTGTTCTAGGTGTGGGTACGGGGTGTACCCTGCTGAGAAGATCAACTGTCTAGACCAG
Seq A exon
ATATGGCACAAAGCTTGTTTTCACTGTGAAGTTTGCAAGATGATGCTATCAGTGAATAACTTTGTGAGTTACCAGAAAAAGCCATACTGTCACGC
Seq C2 exon
CCATAACCCCAAGAACAACACTTTTACAAGTGTCTATTACACTCCATTAAATCTAAATGTGCGGAAACCTCCAGAGGCCATTTGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019327-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0041217=LIM=PU(32.1=75.0)
A:
PF0041217=LIM=FE(55.4=100)
C2:
PF0041217=LIM=PD(8.9=16.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACGATGAATGTGCAGGC
R:
CCCACAAATGGCCTCTGGAG
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]