GgaEX7006564 @ galGal4
Exon Skipping
Gene
ENSGALG00000008914 | NRAP
Description
nebulin-related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
Coordinates
chr6:27035409-27037248:-
Coord C1 exon
chr6:27036553-27037248
Coord A exon
chr6:27036192-27036286
Coord C2 exon
chr6:27035409-27035496
Length
95 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTGTGGTATTTCCAGACG
3' ss Score
7.21
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GACTGATGAATTGCTGCTGTGTAGGCTTTTATCTTCCCCCTGGGCTTATGACAACAGGCTTTAGAACAAAACTGAAATATGAAATGATCAGATCCTAACGTTCACATGGACATGATTCGATTCCGTGAGTTCATTCTTCTATTTAGAGAAAGATATTGCTACCCTCCCTTACGCACTGACACAGTTGCCAAAATAACTGCTCTTACTAACTGGCAGCTTTAAAAGCCAGCCTGCAGCTGACTTTGAAACAGAAGGTCAGGAAACGGAGCAACAGACTTCAATTCAGAGCTTTAATGGGAGCCATTGACCACGGCAAAAGGCCCTGACTGGAGTGTCTAGAGCGTGCTTTGCGCAGGCCAAAAAGTCACTTTCATACTCTTTGAACCTTTTGTATAAACCTATATATTTTTCACTCCGTGGATTTCAAGATGAATGTGCAGCCGTGTGCTAGATGTGGCTATGGGGTTTACCCTGCTGAGAAGATTAACTGTATAGATCAG
Seq A exon
ACGTGGCATAAAGCCTGTTTTCACTGTGAAGTGTGCAAGATGATGTTAACAGTAAACAACTTTGTTAGCCATGAGAAAAAGCCTTACTGTCAAGT
Seq C2 exon
GCACAACCCAAAAAACAATGCCTTCACAAGCATATTTGAGACACCAATAAATTTGAATGCCAAAAAACTATCGGAAGTGGTAAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008914-'3-1,'3-0,4-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0041217=LIM=PU(32.1=75.0)
A:
PF0041217=LIM=FE(55.4=100)
C2:
PF0041217=LIM=PD(8.9=16.7),PF0088013=Nebulin=PU(55.2=53.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGGCCAAAAAGTCACTTT
R:
TGCTTGTGAAGGCATTGTTTT
Band lengths:
182-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]