DreEX6069955 @ danRer10
Exon Skipping
Gene
ENSDARG00000009341 | nrap
Description
nebulin-related anchoring protein [Source:ZFIN;Acc:ZDB-GENE-060616-224]
Coordinates
chr12:30471697-30472827:+
Coord C1 exon
chr12:30471697-30472027
Coord A exon
chr12:30472522-30472616
Coord C2 exon
chr12:30472740-30472827
Length
95 bp
Sequences
Splice sites
3' ss Seq
GTCCCTCTTTTCTCTTTCAGAAC
3' ss Score
13.2
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
AGTGACCGCTTCGACTATAACTGACAGCTGGTCAACCAGTCAGCTGATCGGCCACAGCTAAAGAGAGCTGGAACTGACACCTACTGCCATCTACTAGACCGGCTCTCAATCCCAGAGCACATCTAAGTTTAACACAGGACAGAGACTGACACACAAGTGGGGACAAGGGACTGTCTGGGACGCCTTGCTGTTCCTATACCGTTGCTGGTAGAAGCTCTTTTATTTTTCTCTGGATTTTGGCTTTTAAATTGGATGAAATATGAATGTTCAGAAGTGCGCCAGGTGTGGGTTTGTGGTATACCCAGCAGAGAAGGTCAATCTTATTGGTCAG
Seq A exon
AACTGGCACAAAGCATGTTTTCACTGCGAGGTTTGTAAGATGGTTCTGACTGCCAATAATTATGTGAGCCATCAGAAAAGACCATACTGCCAAGT
Seq C2 exon
GCATAACCCAAAGAACAACACTTTTACAAGTGTTTATGAGACACCAGTCAACATCAATGCAAAGAAGCAATCAGAGGCGGTCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009341-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.162
Domain overlap (PFAM):
C1:
PF0041217=LIM=PU(32.1=75.0)
A:
PF0041217=LIM=FE(55.4=100)
C2:
PF0041217=LIM=PD(8.9=16.7),PF0088013=Nebulin=PU(55.2=53.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTTGCTGTTCCTATACCG
R:
AGTGTTGTTCTTTGGGTTATGC
Band lengths:
173-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]