MmuEX0032529 @ mm10
Exon Skipping
Gene
ENSMUSG00000059857 | Ntng1
Description
netrin G1 [Source:MGI Symbol;Acc:MGI:1934028]
Coordinates
chr3:109872200-110136030:-
Coord C1 exon
chr3:110135263-110136030
Coord A exon
chr3:109934569-109935209
Coord C2 exon
chr3:109872200-109872372
Length
641 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTTTGTCTTCCATAGGGC
3' ss Score
13.29
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CAGATAAGCATGTTAGGCTTCTACCAAAGTCCTCAGCATACCTGACCGCATAGAATATTTCAATCTGTCACATTTGGTTTTGGAATCTGCTTTGAGATCTCAGCCTATTTTTTTATACATATACAGACCTACCTACATAAAGATACATATAGACACGTGCACACACACACACACACACACATATAAGATACTCATGTATATTTAAAAGAGACACTGATTGCATAGAAGACACGAAGATTGCCAAGATTTTAGAGATGTATTTGTCAAGATTCCTGTCGATCCATGCCCTGTGGGTGACAGTGTCCTCTGTGATGCAGCCCTACCTTTTCGTGTGGGGACATTATGATGTATGTAAGAGCCTGATTTACACAGAAGAAGGCAAAGTTTGGGATTACACAGCCTGCCAGCCGGAATCCACGGACATGACCAAGTATCTGAAAGTGAAACTGGACCCTCCGGATATTACCTGTGGAGACCCTCCAGAGTCCTTCTGTGCAATG
Seq A exon
GGCAACCCTTACATGTGCAATAATGAGTGTGATGCGAGTACCCCTGAACTGGCACACCCTCCTGAGCTGATGTTTGATTTTGAAGGAAGACATCCCTCCACATTTTGGCAGTCTGCTACTTGGAAGGAGTACCCCAAACCTCTCCAGGTTAACATCACTCTGTCTTGGAGCAAAACCATTGAACTCACAGACAACATAGTTATTACCTTTGAATCGGGGCGTCCAGACCAAATGATCCTAGAGAAATCTCTCGACTACGGACGAACATGGCAGCCCTATCAGTATTATGCCACAGACTGCCTCCATGCATTCCACATGGACCCGAAATCCGTGAAGGATTTATCTCAGCACACGGTCTTGGAAATCATTTGCACGGAAGAGTACTCCACTGGGTACTCCACGAATAGCAAAATAATCCACTTCGAGATCAAAGACAGGTTTGCGTTTTTCGCTGGACCTCGGCTACGAAATATGGCTTCCCTCTATGGACAGCTGGATACAACCAAGAAACTCAGAGATTTCTTCACTGTCACAGACCTGAGGATCAGGCTGTTGAGACCCGCCGTTGGGGAAATATTTGTAGATGAACTACATTTGGCACGTTACTTTTATGCGATCTCAGACATAAAGGTGCGAGGAAG
Seq C2 exon
GTGCAAGTGCAACCTGCATGCCACTTCGTGTTTGTATGACAACAGCAAACTGACATGTGAATGTGAGCACAACACTACAGGTCCCGACTGTGGGAAATGCAAGAAGAACTACCAGGGCCGACCTTGGAGCCCCGGCTCATACCTCCCCATCCCCAAAGGCACCGCAAACACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059857-'6-8,'6-7,13-8
Average complexity
S
Mappability confidence:
92%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PU(13.0=39.0)
A:
PF0005512=Laminin_N=PD(86.2=99.1)
C2:
PF0005319=Laminin_EGF=WD(100=79.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGCCCTACCTTTTCGTG
R:
CCTTTGGGGATGGGGAGGTAT
Band lengths:
348-989
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types