RnoEX0061344 @ rn6
Exon Skipping
Gene
ENSRNOG00000031136 | Ntng1
Description
netrin G1 [Source:RGD Symbol;Acc:1563465]
Coordinates
chr2:212792194-213065395:-
Coord C1 exon
chr2:213064653-213065395
Coord A exon
chr2:212852209-212852849
Coord C2 exon
chr2:212792194-212792366
Length
641 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTTTGTCTTCCATAGGGC
3' ss Score
13.29
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCAAGCTGTTAACGCCTAACAGATAAGCATGTTAGGTTTCGACCAAAGTCCTCGGCATACCTGACCACGCACAATATTCCCAATCTGTCACGTTTGGTTTTGGAATCTGCTTTGAGACCTCAGCCTATTTTTTTTTTAATATACAGACCTACCTACATAAAGACACGTATAGAGGCACATATATCATATACTCATGTATATTTAAAAGAGACACTGATTGCATATAAGACACGAAGACTGCCAAGATTTTAGAGATGTATTTGTCAAGATTCCTGTCGATTCATGCCCTGTGGGTTACAGTGTCCTCTGTGATGCAGCCTTACCCTTTAGTGTGGGGACATTATGATGTGTGTAAAACTCAGATTTACACGGAAGAAGGGAAAGTTTGGGATTACATGGCCTGCCAGCCAGAATCCACGGACATGACAAAATATCTGAAAGTGAAACTGGATCCTCCGGATATTACCTGTGGAGACCCGCCAGAGTCATTCTGTGCAATG
Seq A exon
GGCAACCCTTACATGTGCAATAATGAGTGTGATGCGAGTACCCCCGAACTGGCACACCCTCCTGAGCTGATGTTTGATTTTGAAGGAAGACATCCCTCCACATTTTGGCAGTCTGCTACTTGGAAGGAATACCCCAAACCTCTCCAGGTTAACATCACTCTGTCTTGGAGCAAAACCATTGAACTCACAGACAACATAGTTATTACCTTTGAATCGGGGCGTCCAGATCAAATGATCCTAGAGAAATCTCTGGATTACGGACGAACATGGCAGCCCTATCAGTATTACGCCACGGACTGCCTACATGCATTCCACATGGACCCGAAATCCGTGAAGGATTTATCCCAGCACACGGTCTTAGAAATCATTTGCACAGAAGAGTACTCCACTGGGTACTCCACAAATAGCAAAATAATCCACTTCGAGATCAAAGACAGGTTTGCATTTTTTGCTGGACCTCGGCTACGAAATATGGCTTCCCTCTATGGACAGCTGGATACAACCAAGAAACTCAGAGATTTCTTCACAGTCACGGACCTGAGGATCAGGCTGTTGAGACCCGCCGTTGGGGAAATATTTGTAGATGAACTACATTTGGCACGTTACTTTTATGCGATCTCAGACATAAAGGTGCGAGGAAG
Seq C2 exon
GTGCAAGTGCAACCTGCATGCCACCATGTGTGTGTATGACAACAGCAAACTGACATGTGAGTGCGAGCACAACACTACAGGTCCAGACTGTGGGAAGTGCAAGAAGAATTACCAGGGCCGACCGTGGAGTCCAGGCTCATACCTCCCCATCCCCAAAGGCACCGCTAACACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031136_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0005512=Laminin_N=WD(100=99.5)
C2:
PF0005319=Laminin_EGF=WD(100=79.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGATGCAGCCTTACCCT
R:
CCTTTGGGGATGGGGAGGTAT
Band lengths:
354-995
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]