BtaEX6016228 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014530 | MGC139448
Description
Bos taurus netrin G2 (NTNG1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080369]
Coordinates
chr3:36063308-36329943:-
Coord C1 exon
chr3:36329207-36329943
Coord A exon
chr3:36136938-36137578
Coord C2 exon
chr3:36063308-36063480
Length
641 bp
Sequences
Splice sites
3' ss Seq
CTTTTGTTCTTCTTCCATAGGGC
3' ss Score
12.41
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GATACGTTCTAGGACAATGAAAAAGCTGCCAGTCGTTGCTAATGCCTAGTGCACAAGTATGCTAGGCTTCCACCAAAGTCCTCAATATACCTGAACATGTGCAATATATGAACCCTTCGCTTTTAATTTTGGAATCTACGTTGAAGTCTCATCTTCTTTTTCTTTTTTTTTTCTTTTTTTAATATACAAACCTACCTACGTATAGACATAGATAAGCTGCTTTAGTTACCACGAAGATTGCCAAGAATTTAGAGATGTATTTGTCAAGATTTCTGTCAATTCATGCCCTTTGGGTTACAGTGTCCTCAGTGATGCAGCCCTACCCTTTAGTGTGGGGACATTATGATGTGTGTAAGACTCAGATTTATACCGAAGAAGGGAAAGTGTGGGATTACATGGCCTGTCAGCCGGAATCCACAGACATGACAAAATATCTGAAAGTGAAACTGGATCCTCCAGACATTACCTGTGGAGACCCTCCGGAGACGTTCTGTGCAATG
Seq A exon
GGCAACCCGTACATGTGCAATAATGAGTGTGATGCAAGTACCCCAGAACTGGCACACCCACCGGAACTGATGTTTGACTTTGAAGGAAGACATCCCTCCACCTTTTGGCAGTCTGCTACTTGGAAAGAGTATCCCAAGCCTCTCCAGGTTAACATCACTCTGTCTTGGAGCAAAACTATCGAGCTAACAGACAACATAGTTATTACCTTTGAATCAGGGCGTCCAGACCAAATGATCCTGGAGAAGTCTCTTGACTATGGACGAACGTGGCAGCCGTATCAGTATTATGCCACAGACTGCTTAGACGCTTTTCACATGGATCCTAAATCCGTGAAGGATTTATCACAGCATACGGTCTTAGAAATCATTTGCACTGAAGAGTACTCCACAGGTTATACGACAAATAGCAAAATCATCCACTTTGAAATCAAAGACAGGTTCGCATTTTTTGCCGGACCTTGGTTACGCAATATGGCTTCCCTCTACGGACAACTGGATACAACCAAGAAACTCAGAGATTTCTTTACGGTCACAGACCTGAGGATAAGGCTTTTGAGACCCGCCGTCGGGGAAATATTTGTAGATGAGCTACGCTTGGCACGCTACTTTTACGCAATCTCAGACATAAAGGTGCACGGAAG
Seq C2 exon
GTGCAAATGCAATCTCCATGCCACTGTGTGCGTGTATGACAACAGCAAACTGACCTGTGAATGTGAGCACAACACTACAGGTCCAGACTGTGGGAAATGCAAGAAGAATTATCAGGGCCGACCTTGGAGTCCAGGCTCGTATCTCCCCATCCCCAAAGGCACTGCAAATACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014530-'4-5,'4-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PU(13.0=39.0)
A:
PF0005512=Laminin_N=PD(86.2=99.1)
C2:
PF0005319=Laminin_EGF=WD(100=79.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTTTGGGTTACAGTGTCC
R:
TCCAAGGTCGGCCCTGATAAT
Band lengths:
344-985
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]