DreEX6026179 @ danRer10
Exon Skipping
Gene
ENSDARG00000073713 | vav3b
Description
vav 3 guanine nucleotide exchange factor b [Source:ZFIN;Acc:ZDB-GENE-070912-251]
Coordinates
chr2:16121231-16231597:+
Coord C1 exon
chr2:16121231-16121802
Coord A exon
chr2:16195484-16196127
Coord C2 exon
chr2:16231425-16231597
Length
644 bp
Sequences
Splice sites
3' ss Seq
CCAATCTCTGTGTGTTTCAGGAA
3' ss Score
10.91
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AGAAGGAATTAATACCACTCATTCACACCGGTGACCCACAGCTTTGTCAAAACACGTTCAAGCAACACAATCAGATGAAAGGAAACAAACAAATGAAATTAAAGCAGCTTAAAGAAGCAGAGTCAAAGCTGGCACAGATGCTGGCCTCTTTCCCCCTTTAAAGTTGAATTTTGCGGTCTGCCTCATCACCCTCTGCCAGCTTATTGTTTATCAGACTCTGTTTAATGAGGCATCAGAAGAAATCCGCAACCATGCATTTTCTGCTAGCGTTTGTACTACAGGCCCTGTGGGTGAATTGGTGTCACGCCACACAGCATTACCTGGCCTCGTGGGGGCATTATGATGTTTGTAAGTCTCAGGTACATGCTGAGGATCGCCTAGCCTGGCATTACATGGCCTGCCAGCCTGAAGCCACTGATATGACCCAATACCTGTCTATGGTGTCTTTGGATCCACCCAATATCACCTGCGGAGACCCACCTGAGATGTACTGCGCACTG
Seq A exon
GAAAACCCGTATATGTGTAATAACGAATGCGACGCTGAGACCGAAGAACTGGCCCATCCTCCCAAACTCATGTTCGACTCCGAAGGACGAAACCCCACTACATTCTGGCAGTCCACTTCTTGGAAGAAATATCCGAAGCCCCTTCAGGTCAACATTACGCTGTCCTGGAACAAAACTATTGAACTCACTGATGACATTGTCCTTACGTTTGAATCCGGCCGACCTGAGCAGCTGGTCTTGGAGAAGTCGCTGGATTATGGTCGCACGTGGCAGCCGTATCAGTTTTACGCCGCTGATTGTTTGGATGCATTTACCATGGAGCCAAAAGCGGTTCATCAGCTCACTACAAGCACCATGCTTGAAATCATCTGCACTGAAGCCTATTCAACAGGCTACGTGTGGAAGCAAGACAAGACTTTACGCTTTGAGATCAAGGACCGTTTCGCCCTTCTTGCAGGCCCCAGACTGCACAACATGGCTTCTCTGTATGGGCAGCTGGACACCACCAAGAACCTAAGGGATTTCTTCACCCTCACTGACCTCCGCATCAGACTCCTGCGGCCTGCAACCGGAGCCACCATGGTGGATGAGAACAACCTCTCCAGATACTTCTACGCCATCTCGGATATCAAAGTGCAGGGCAG
Seq C2 exon
GTGCAAGTGCAACCTCCATGCCAACAGCTGTGTTTATGACAATGGAAAGCTGGGCTGCGAATGCGAGCACAACACCACGGGGCCGGATTGCGCCCGCTGTAAGAGGCACTACCAGGGCCGAGCCTGGAGTATGGGCTCCTACCTGCCCATCCCCAAGGGCACCGCCAATATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073713-'3-4,'3-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PU(13.3=35.9)
A:
PF0005512=Laminin_N=PD(85.9=99.1)
C2:
PF0005319=Laminin_EGF=WD(100=79.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCACCCTCTGCCAGCTTA
R:
AAACACAGCTGTTGGCATGGA
Band lengths:
353-997
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]