GgaEX1040606 @ galGal3
Exon Skipping
Gene
ENSGALG00000001896 | NTNG1
Description
NA
Coordinates
chr8:824132-908473:+
Coord C1 exon
chr8:824132-824552
Coord A exon
chr8:881474-882114
Coord C2 exon
chr8:908295-908473
Length
641 bp
Sequences
Splice sites
3' ss Seq
CCTGTTTTACTCTTTTCTAGGGA
3' ss Score
11.39
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TTCTACCAAAGTCTTCAACGTAATAAAGCAAACGCTGTATCCTAATGCCTCACGTTTGAGTTGGAACCTATTTTATGAAATATATACATGCATATGTACATATATGTATAATCTATAGACTGAACGTACGTCAGTACTGAGCATCCTCACGAAGGTGATCTAAAAGGATTTAGAAATGTATTTGTCGAGATTTCTGTCACTTCACGCCCTCTGGGTCACCGTCTCTTCCATGATGCAGCATTATCCTTCCGTGTGGGGACATTACGATGTGTGTAAGACTCAGATTTACACAGAAGAAGGAAAAGTATGGGATTACATGGCCTGCCAGCCAGAAGCCAGAGACATGATCAAATACGTAAGAGTGACTCTGGATCCCCCAGATATAACGTGTGGAGATCCTCCTGAGACTTTCTGTGCAATG
Seq A exon
GGAAACCCCTACATGTGCAATAATGAATGTGATGCAAGTACCCAAGAACTGGCTCACCCTCCGGAACTGATGTTTGATCTTGAAGGAAGACATCCATCCACATTTTGGCAGTCCACAACATGGAAGGATTATCCAAAGCCTCTTCATGTCAATATTACACTCTCCTGGAACAAAACCATTGAGCTGACAGATAACATAGTTATCACTTTTGAATCTGGCCGTCCAGACCAAATGATCCTGGAGAAATCCCTCGACTATGGACGAACATGGCAGCCCTACCAATATTATGCCACAGACTGTTTAGATGCTTTCCACATGGATCCAAAATCAGTGAAGGATTTATCACAGCATACAGTCCTAGAAATCATTTGCACGGAAGAATACTCTACTGGATATATGACAAACAGTAAAATAATCCACTTTGAAATCAAAGATAGATTTGCTTTTTTTGCTGGACCTCGGCTTCATAATATGGCTTCTCTTTATGGCCAGCTTGACACAACCAAGAAGTTGAGAGATTTCTTTACCATCACAGATCTGAGGATAAGATTGCTTAGACCAGCAACTGGAGAAATATATGTAGATGAGCAACACCTGGCACGGTACTTTTATGCCATCTCAGACATAAGGGTATATGGAAG
Seq C2 exon
AAATAGGTGTAAGTGCAACCTTCACGCTACTGGCTGTAAAGAAGAAAACAAAAGACTACTTTGCGAATGTGAGCATAACACAACTGGCCCAGACTGTGGAAAATGCAAGAAGAATTACCAGGGCCGACCATGGAGCCCTGGTTCTTATCTGCCTATACCTAAGGGCACTGCTAATATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001896-'0-6,'0-5,1-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PU(13.0=39.0)
A:
PF0005512=Laminin_N=PD(86.2=99.1)
C2:
PF0005319=Laminin_EGF=WD(100=77.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTCTTCCATGATGCAGCA
R:
AGGCAGATAAGAACCAGGGCT
Band lengths:
356-997
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]