Special

MmuEX0033090 @ mm9

Exon Skipping

Gene
ENSMUSG00000066030 | Oog2
Description
oogenesin 2 [Source:MGI Symbol;Acc:MGI:2684035]
Coordinates
chr4:143783878-143786038:+
Coord C1 exon
chr4:143783878-143784188
Coord A exon
chr4:143784712-143785272
Coord C2 exon
chr4:143785712-143786038
Length
561 bp
Sequences
Splice sites
3' ss Seq
TATACTCGTTTCTACCACAGTAG
3' ss Score
4.93
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CATGACTCTTTAGAAGAAGACACAATGAATTTCTATTCGCCACCCACTCTGATGGAGCTAGCAAGACAGTGTCTACTGAGGGATGAGTACTTGGCCATTTCTGCTCTCAAGGACCTGCCCAATATGATGTTCCCAGTGATGTTTAAGGAGGCATTTATTGATGGACATACAAAGATCTTGACTGCCATGATACCTGTGTGGCCCTTCCCATACCTTTCTGTAGGAACGATGCTAAAGAACCTCAACTTAGACACTTTGAAGGCTGTTCTTGAGGAGATAGATATACTGATTTCAAAACCAGTTTTTTCCAG
Seq A exon
TAGGTGCAAACTCAGAGAGATCACTTTGAGCCATGATTTGGTTGTGGTATGGGCTGGATCCCATGAAGTTGAAGGCTTACCAGAGTTCATGGAACAGGAGAAGCCAGTTGAGAATAGTCCTGGCTATGGGACAAAGAACAAATTGAAAGTGACAACAGAACTCCAATTCATGGAGGGCCACCTTGATGAATGTTCCACTTACTTGTTGCAGTGGGCCTACCAGAGAGAAGATTCCATTCATCTACACTGTAGAAAGCTGAAAATTTATGGCTTAACCAAAGCCGCAGTCATAGAAATGTTCAAAATTGTACATGCAGAATATATAGAAGATCTGGAACTATCTTGTCTTTGCCTAGAATATTTGGATTTTCTTAATCCCTATCTGAAACAGATGAGCAATCTACTCTCACTCACACTAGATGAGATCATATATACCCTCAATATAGATGATTATAGAAATCTTAATGAGGAAAAAGTGATTACAGTGATTTCTCATCTTCCTACATTCCACCATCTCCAGGAACTCTATGTACATGGTGTCATTTTTATAGAATGTCTCAG
Seq C2 exon
GTCCTGAATCATGTTGCTATGGACAGGCCTCAGACTAGAATGATCTGAGTTGTGTGAACAGACAACAGAAGGCAATGTCCTGGGTGGGGTTTGACCTCAATGTATTGTCAGACTGAGACTGAGAGAAGTGTCATCTGCTTGTCTGCCAATCTATCAACCCTGATTGTCACAATTTTCCAGAAAGCAACCATTTCTTCTCTCCCCAGGTGCCTGAAGAAGCCCTTGGAAGTACTTTCGTTCACTGACTGTGACCTCTCACAGTCAGACTTGGATTACCTCCCCTATTGCCTGAATATTTTTGAGCTCAGATCTCTCCACCTGACTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066030_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=50%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.035 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000101384





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000079267, ENSMUSP00000115150, ENSMUSP00000130788
          









    
Other Skipping Isoforms:
NA
  



Associated events






Conservation


Human
(hg38)
chr1:12775543-12776118 
HIGH PSI
HsaEX6028564
(PRAMEF12)
Human
(hg19)
chr1:12835686-12836261 
HsaEX6028564
(PRAMEF12)
Rat
(rn6)
chr5:162441550-162442116 
HIGH PSI
RnoEX6024348
(Pramef17)
Cow
(bosTau6)
chr16:55729029-55729554 
BtaEX0001169
([1])
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CCACCCACTCTGATGGAGCTA

				
R: 
CACCCAGGACATTGCCTTCTG

				
Band lengths: 
358-919

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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